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feat(openontology): implement OpenOntology Phase 0 + local engine and CLI (#99)
Implements OpenPRD 0001 through Phase 0 (specification, schemas, example, docs surface) and Phase 1 (local engine, CLI, conformance tests). Schemas (17 contracts, JSON Schema Draft 2020-12, additionalProperties:false) manifest, namespace, entity-type, property, relationship-type, constraint, query, action, entity, claim, source, evidence, changeset, review, approval, event, package — registered in @logicsrc/validators and exported from @logicsrc/schemas under https://logicsrc.com/schemas/openontology/. @logicsrc/openontology - canonical JSON + sha256 package digests; YAML, JSON, NDJSON, and inline authoring all compile to the same bytes, so digests are authoring-agnostic - id profile: compact / IRI / urn with one canonicalization rule, prefix bound by a Namespace object so IRIs reverse unambiguously - validation: schema, graph (domain/range, datatypes, dangling refs), provenance (source-or-firstParty, agent runId, derivation inputs), policy (excerpt limits, licensing, visibility, staleness) and declared constraints; four severities, stable codes, text/json/yaml/markdown - portable triple-pattern query AST: multi-hop, 14 operators, asOf and recordedAsOf, per-status filtering, distinct/order/limit, explanation mode, and enforced depth/binding/row limits - append-only store: claims are immutable; dispute/retract/supersede append status transitions and the effective status is the latest one - change sets: 9 operations, atomic pre-flight, conflict detection on stale base revisions, semantic diff with duplicate-identity warnings and affected-query deltas, per-operation reviewer decisions - policy: agents propose but can never apply — the denial keys on actor type, so every scope plus high confidence plus --yolo still cannot apply; merges need approval, bulk retractions need two, undeclared action side effects are denied - JSON-LD 1.1 export/import with PROV-O aliases and lossy-field reporting - pluggable signature envelope with a jws-ed25519 reference profile and a fail-closed trust policy CLI: logicsrc ontology init|validate|lint|build|inspect, entity, claim, query, changeset, import, export, audit. Reads take --format, writes default to a proposal, exit codes are stable for CI. Example: examples/openontology/ethereum-ecosystem — 12 entity types, 17 relationship types, 63 entities, 169 claims, 25 sources, 31 evidence records, 5 saved queries, every claim lifecycle state, and a pending merge proposal. All data is fictional; the directory is removable without affecting any core test. Docs: docs/openontology{,-governance,-interoperability}.md, a real /openontology route, homepage + nav + sitemap entries, and a root README section. Verification: 112 new tests; full monorepo build and every workspace test pass; conformance bundle (18 valid + 13 invalid fixtures) runs against the published schemas alone; Node.js 25 and Bun 1.3 produce byte-identical digests, revisions, event trails, and query results. Not included (later PRD phases): MCP resources, REST/SSE, Turso adapter, TUI and PWA surfaces, RDF/SHACL mappings, source adapters, governed actions. Refs: prd/0001-add-logicsrc-openontology-spec.md Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
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101 changed files with 11934 additions and 10 deletions
158
packages/schemas/fixtures/openontology/conformance.json
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158
packages/schemas/fixtures/openontology/conformance.json
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{
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"openontologyConformance": "0.1",
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"description": "Conformance fixtures for LogicSRC OpenOntology. A third-party implementation can run these against the published JSON Schemas with no LogicSRC code: every valid fixture must validate, every invalid fixture must fail.",
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"valid": [
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{
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"fixture": "valid/manifest.json",
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"kind": "openontology-manifest"
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},
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{
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"fixture": "valid/namespace.json",
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"kind": "openontology-namespace"
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},
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{
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"fixture": "valid/entity-type.json",
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"kind": "openontology-entity-type"
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},
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{
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"fixture": "valid/property.json",
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"kind": "openontology-property"
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},
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{
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"fixture": "valid/relationship-type.json",
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"kind": "openontology-relationship-type"
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},
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{
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"fixture": "valid/constraint.json",
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"kind": "openontology-constraint"
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},
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{
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"fixture": "valid/query.json",
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"kind": "openontology-query"
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},
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{
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"fixture": "valid/query-adhoc.json",
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"kind": "openontology-query"
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},
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{
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"fixture": "valid/action.json",
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"kind": "openontology-action"
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},
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{
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"fixture": "valid/entity.json",
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"kind": "openontology-entity"
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},
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{
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"fixture": "valid/claim-relationship.json",
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"kind": "openontology-claim"
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},
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{
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"fixture": "valid/claim-value.json",
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"kind": "openontology-claim"
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},
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{
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"fixture": "valid/source.json",
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"kind": "openontology-source"
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},
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{
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"fixture": "valid/evidence.json",
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"kind": "openontology-evidence"
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},
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{
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"fixture": "valid/changeset.json",
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"kind": "openontology-changeset"
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},
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{
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"fixture": "valid/review.json",
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"kind": "openontology-review"
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},
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{
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"fixture": "valid/approval.json",
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"kind": "openontology-approval"
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},
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{
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"fixture": "valid/event.json",
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"kind": "openontology-event"
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}
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],
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"invalid": [
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{
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"fixture": "invalid/claim-both-objects.json",
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"kind": "openontology-claim",
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"mustFail": true,
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"reason": "A claim object carries an entity reference or a typed value, never both."
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},
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{
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"fixture": "invalid/claim-unknown-status.json",
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"kind": "openontology-claim",
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"mustFail": true,
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"reason": "status must be one of the six declared claim states."
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},
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{
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"fixture": "invalid/claim-confidence-out-of-range.json",
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"kind": "openontology-claim",
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"mustFail": true,
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"reason": "confidence must be between 0 and 1."
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},
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{
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"fixture": "invalid/claim-extra-property.json",
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"kind": "openontology-claim",
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"mustFail": true,
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"reason": "Undeclared properties are rejected; extensions must go in the namespaced extensions object."
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},
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{
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"fixture": "invalid/entity-missing-canonical-name.json",
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"kind": "openontology-entity",
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"mustFail": true,
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"reason": "canonicalName is required on every entity."
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},
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{
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"fixture": "invalid/manifest-no-maintainer.json",
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"kind": "openontology-manifest",
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"mustFail": true,
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"reason": "At least one maintainer is required."
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},
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{
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"fixture": "invalid/manifest-bad-version.json",
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"kind": "openontology-manifest",
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"mustFail": true,
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"reason": "Package versions must be semantic versions."
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},
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{
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"fixture": "invalid/manifest-bad-id.json",
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"kind": "openontology-manifest",
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"mustFail": true,
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"reason": "Package ids are lowercase kebab-case."
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},
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{
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"fixture": "invalid/relationship-no-range.json",
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"kind": "openontology-relationship-type",
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"mustFail": true,
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"reason": "A relationship type must declare at least one allowed object type."
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},
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{
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"fixture": "invalid/evidence-unknown-selector.json",
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"kind": "openontology-evidence",
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"mustFail": true,
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"reason": "Evidence selectors must use one of the declared machine-readable shapes."
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},
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{
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"fixture": "invalid/changeset-empty-operations.json",
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"kind": "openontology-changeset",
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"mustFail": true,
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"reason": "A change set must contain at least one operation."
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},
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{
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"fixture": "invalid/changeset-unknown-op.json",
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"kind": "openontology-changeset",
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"mustFail": true,
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"reason": "Hard deletion is not an operation; use retract-claim or archive-entity."
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},
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{
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"fixture": "invalid/action-no-permissions.json",
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"kind": "openontology-action",
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"mustFail": true,
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"reason": "Actions must declare the scopes they require."
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}
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]
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}
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{
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"openontology": "0.1",
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"kind": "Action",
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"id": "doThing",
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"label": "Do thing",
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"executor": {
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"type": "http",
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"endpoint": "https://example.org/do"
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},
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"approval": {
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"mode": "none"
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}
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}
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{
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"openontology": "0.1",
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"kind": "ChangeSet",
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"id": "changeset:bad",
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"title": "Nothing",
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"createdAt": "2026-07-26T00:00:00Z",
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"createdBy": "curator",
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"operations": [],
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"status": "proposed"
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}
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{
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"openontology": "0.1",
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"kind": "ChangeSet",
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"id": "changeset:bad2",
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"title": "Delete everything",
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"createdAt": "2026-07-26T00:00:00Z",
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"createdBy": "curator",
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"operations": [
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{
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"op": "delete-claim",
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"target": "ex:claim:0001"
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}
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],
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"status": "proposed"
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}
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{
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"openontology": "0.1",
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"kind": "Claim",
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"id": "ex:claim:bad",
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"subject": "ex:person:alice",
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"predicate": "worksOn",
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"object": {
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"entity": "ex:project:zk",
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"value": "ZK"
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},
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"status": "asserted",
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"assertedAt": "2026-07-26T00:00:00Z",
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"assertedBy": "curator"
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}
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{
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"openontology": "0.1",
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"kind": "Claim",
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"id": "ex:claim:bad3",
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"subject": "ex:person:alice",
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"predicate": "worksOn",
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"object": {
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"entity": "ex:project:zk"
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},
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"status": "asserted",
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"confidence": 1.4,
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"assertedAt": "2026-07-26T00:00:00Z",
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"assertedBy": "curator"
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}
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{
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"openontology": "0.1",
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"kind": "Claim",
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"id": "ex:claim:bad4",
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"subject": "ex:person:alice",
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"predicate": "worksOn",
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"object": {
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"entity": "ex:project:zk"
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},
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"status": "asserted",
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"assertedAt": "2026-07-26T00:00:00Z",
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"assertedBy": "curator",
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"chainOfThought": "first I considered..."
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}
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{
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"openontology": "0.1",
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"kind": "Claim",
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"id": "ex:claim:bad2",
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"subject": "ex:person:alice",
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"predicate": "worksOn",
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"object": {
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"entity": "ex:project:zk"
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},
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"status": "probably",
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"assertedAt": "2026-07-26T00:00:00Z",
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"assertedBy": "curator"
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}
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{
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"openontology": "0.1",
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"kind": "Entity",
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"id": "ex:person:bob",
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"type": "Person",
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"createdAt": "2026-07-26T00:00:00Z",
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"createdBy": "curator"
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}
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{
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"openontology": "0.1",
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"kind": "Evidence",
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"id": "ex:evidence:bad",
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"source": "ex:source:repo",
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"selector": {
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"type": "vibes",
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"hint": "somewhere in the file"
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}
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}
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{
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"openontology": "0.1",
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"kind": "OntologyPackage",
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"id": "Example_Ontology",
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"name": "Example",
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"version": "0.1.0",
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"namespace": "https://logicsrc.com/ontology/example/",
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"description": "Id is not kebab-case.",
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"license": "CC-BY-4.0",
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"maintainers": [
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{
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"id": "mailto:c@example.org"
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}
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]
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}
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{
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"openontology": "0.1",
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"kind": "OntologyPackage",
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"id": "example-ontology",
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"name": "Example",
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"version": "v1",
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"namespace": "https://logicsrc.com/ontology/example/",
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"description": "Version is not semver.",
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"license": "CC-BY-4.0",
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"maintainers": [
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{
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"id": "mailto:c@example.org"
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}
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]
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}
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{
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"openontology": "0.1",
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"kind": "OntologyPackage",
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"id": "example-ontology",
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"name": "Example",
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"version": "0.1.0",
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"namespace": "https://logicsrc.com/ontology/example/",
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"description": "Missing maintainers.",
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"license": "CC-BY-4.0",
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"maintainers": []
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}
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{
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"openontology": "0.1",
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"kind": "RelationshipType",
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"id": "worksOn",
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"label": "works on",
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"description": "Missing to.",
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"from": [
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"Person"
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],
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"to": []
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}
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29
packages/schemas/fixtures/openontology/valid/action.json
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29
packages/schemas/fixtures/openontology/valid/action.json
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{
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"openontology": "0.1",
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"kind": "Action",
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"id": "createProjectReviewTask",
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"label": "Create project review task",
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"input": {
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"project": {
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"entityType": "Project",
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"required": true
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}
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},
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"executor": {
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"type": "logicsrc-plugin-tool",
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"plugin": "commandboard",
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"tool": "task.create"
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},
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"permissions": {
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"required": [
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"ontology:action:execute"
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]
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},
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"approval": {
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"mode": "policy"
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},
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"sideEffects": [
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"creates-task",
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"emits-event"
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]
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}
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12
packages/schemas/fixtures/openontology/valid/approval.json
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12
packages/schemas/fixtures/openontology/valid/approval.json
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{
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"openontology": "0.1",
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"kind": "Approval",
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"id": "approval:0001",
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"changeSet": "changeset:0001",
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"approver": "mailto:curator@example.org",
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"approverType": "human",
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"scopes": [
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"ontology:changeset:approve"
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],
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"createdAt": "2026-07-26T00:00:00Z"
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}
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34
packages/schemas/fixtures/openontology/valid/changeset.json
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34
packages/schemas/fixtures/openontology/valid/changeset.json
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{
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"openontology": "0.1",
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"kind": "ChangeSet",
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"id": "changeset:0001",
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"ontology": "example-ontology@0.1.0",
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"title": "Add Alice as a contributor",
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"rationale": "Repository activity identifies the contribution.",
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"createdAt": "2026-07-26T00:00:00Z",
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"createdBy": "agent:research-mapper",
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"actorType": "agent",
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"runId": "run_01J3EXAMPLE",
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"operations": [
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{
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"op": "add-entity",
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"value": {
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"id": "ex:person:alice",
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"type": "Person",
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"canonicalName": "Alice Reyes"
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}
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},
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{
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"op": "assert-claim",
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"value": {
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"subject": "ex:person:alice",
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"predicate": "worksOn",
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"object": {
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"entity": "ex:project:zk"
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}
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}
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}
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],
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"requiredApprovals": 1,
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"status": "proposed"
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}
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{
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"openontology": "0.1",
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"kind": "Claim",
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"id": "ex:claim:0001",
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"ontology": "example-ontology@0.1.0",
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"subject": "ex:person:alice",
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"predicate": "worksOn",
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"object": {
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"entity": "ex:project:zk"
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},
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"status": "asserted",
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"confidence": 0.94,
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"validTime": {
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"from": "2026-04-01T00:00:00Z",
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"to": null
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},
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"assertedAt": "2026-07-26T00:00:00Z",
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"assertedBy": "agent:research-mapper",
|
||||
"runId": "run_01J3EXAMPLE",
|
||||
"sources": [
|
||||
"ex:source:repo"
|
||||
]
|
||||
}
|
||||
|
|
@ -0,0 +1,15 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Claim",
|
||||
"id": "ex:claim:0002",
|
||||
"subject": "ex:project:zk",
|
||||
"predicate": "homepage",
|
||||
"object": {
|
||||
"value": "https://example.org/zk",
|
||||
"datatype": "url"
|
||||
},
|
||||
"status": "asserted",
|
||||
"assertedAt": "2026-07-26T00:00:00Z",
|
||||
"assertedBy": "mailto:curator@example.org",
|
||||
"firstParty": true
|
||||
}
|
||||
12
packages/schemas/fixtures/openontology/valid/constraint.json
Normal file
12
packages/schemas/fixtures/openontology/valid/constraint.json
Normal file
|
|
@ -0,0 +1,12 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Constraint",
|
||||
"id": "project-has-homepage",
|
||||
"description": "Projects should record a homepage.",
|
||||
"severity": "warning",
|
||||
"rule": {
|
||||
"type": "required-predicate",
|
||||
"entityType": "Project",
|
||||
"predicate": "homepage"
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "EntityType",
|
||||
"id": "Person",
|
||||
"label": "Person",
|
||||
"description": "A human participant.",
|
||||
"keyProperties": [
|
||||
"canonicalName"
|
||||
],
|
||||
"properties": {
|
||||
"role": {
|
||||
"type": "string",
|
||||
"required": false
|
||||
}
|
||||
}
|
||||
}
|
||||
16
packages/schemas/fixtures/openontology/valid/entity.json
Normal file
16
packages/schemas/fixtures/openontology/valid/entity.json
Normal file
|
|
@ -0,0 +1,16 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Entity",
|
||||
"id": "ex:person:alice",
|
||||
"type": "Person",
|
||||
"canonicalName": "Alice Reyes",
|
||||
"aliases": [
|
||||
"alice.eth"
|
||||
],
|
||||
"externalIds": {
|
||||
"github": "alice"
|
||||
},
|
||||
"status": "active",
|
||||
"createdAt": "2026-07-26T00:00:00Z",
|
||||
"createdBy": "mailto:curator@example.org"
|
||||
}
|
||||
17
packages/schemas/fixtures/openontology/valid/event.json
Normal file
17
packages/schemas/fixtures/openontology/valid/event.json
Normal file
|
|
@ -0,0 +1,17 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Event",
|
||||
"id": "event:0001",
|
||||
"type": "changeset.applied",
|
||||
"ontology": "example-ontology",
|
||||
"at": "2026-07-26T00:00:00Z",
|
||||
"actor": "mailto:curator@example.org",
|
||||
"actorType": "human",
|
||||
"changeSet": "changeset:0001",
|
||||
"revision": "data-000042",
|
||||
"policyDecision": {
|
||||
"rule": "apply.scope",
|
||||
"decision": "allow",
|
||||
"reason": "Actor holds ontology:claim:write"
|
||||
}
|
||||
}
|
||||
12
packages/schemas/fixtures/openontology/valid/evidence.json
Normal file
12
packages/schemas/fixtures/openontology/valid/evidence.json
Normal file
|
|
@ -0,0 +1,12 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Evidence",
|
||||
"id": "ex:evidence:0001",
|
||||
"source": "ex:source:repo",
|
||||
"selector": {
|
||||
"type": "line-range",
|
||||
"start": 41,
|
||||
"end": 48
|
||||
},
|
||||
"excerpt": "Alice authored the prover module."
|
||||
}
|
||||
21
packages/schemas/fixtures/openontology/valid/manifest.json
Normal file
21
packages/schemas/fixtures/openontology/valid/manifest.json
Normal file
|
|
@ -0,0 +1,21 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "OntologyPackage",
|
||||
"id": "example-ontology",
|
||||
"name": "Example Ontology",
|
||||
"version": "0.1.0",
|
||||
"namespace": "https://logicsrc.com/ontology/example/",
|
||||
"description": "A minimal conforming package manifest.",
|
||||
"license": "CC-BY-4.0",
|
||||
"maintainers": [
|
||||
{
|
||||
"id": "mailto:curator@example.org"
|
||||
}
|
||||
],
|
||||
"schema": {
|
||||
"entityTypes": "schema/entity-types.yaml"
|
||||
},
|
||||
"data": {
|
||||
"entities": "data/entities.ndjson"
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,7 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Namespace",
|
||||
"prefix": "ex",
|
||||
"uri": "https://logicsrc.com/ontology/example/",
|
||||
"description": "Compact prefix for the example package."
|
||||
}
|
||||
|
|
@ -0,0 +1,8 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Property",
|
||||
"id": "homepage",
|
||||
"label": "homepage",
|
||||
"description": "Canonical URL.",
|
||||
"type": "url"
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
{
|
||||
"openontologyQuery": "0.1",
|
||||
"ontology": "example-ontology@0.1.0",
|
||||
"match": [
|
||||
{
|
||||
"subject": "?person",
|
||||
"predicate": "worksOn",
|
||||
"object": "ex:project:zk"
|
||||
}
|
||||
],
|
||||
"select": [
|
||||
"?person"
|
||||
],
|
||||
"asOf": "2026-07-26T00:00:00Z",
|
||||
"limit": 100
|
||||
}
|
||||
24
packages/schemas/fixtures/openontology/valid/query.json
Normal file
24
packages/schemas/fixtures/openontology/valid/query.json
Normal file
|
|
@ -0,0 +1,24 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "SavedQuery",
|
||||
"id": "contributors",
|
||||
"description": "People working on a project.",
|
||||
"query": {
|
||||
"match": [
|
||||
{
|
||||
"subject": "?person",
|
||||
"predicate": "worksOn",
|
||||
"object": "?project"
|
||||
}
|
||||
],
|
||||
"select": [
|
||||
"?person",
|
||||
"?project"
|
||||
],
|
||||
"include": {
|
||||
"claimStatus": [
|
||||
"asserted"
|
||||
]
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "RelationshipType",
|
||||
"id": "worksOn",
|
||||
"label": "works on",
|
||||
"description": "A person contributes work to a project.",
|
||||
"from": [
|
||||
"Person"
|
||||
],
|
||||
"to": [
|
||||
"Project"
|
||||
],
|
||||
"cardinality": "many-to-many",
|
||||
"temporal": true,
|
||||
"inverse": "hasContributor"
|
||||
}
|
||||
17
packages/schemas/fixtures/openontology/valid/review.json
Normal file
17
packages/schemas/fixtures/openontology/valid/review.json
Normal file
|
|
@ -0,0 +1,17 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Review",
|
||||
"id": "review:0001",
|
||||
"changeSet": "changeset:0001",
|
||||
"reviewer": "mailto:curator@example.org",
|
||||
"state": "changes-requested",
|
||||
"comment": "Second operation lacks a source.",
|
||||
"createdAt": "2026-07-26T00:00:00Z",
|
||||
"operationDecisions": [
|
||||
{
|
||||
"index": 1,
|
||||
"decision": "reject",
|
||||
"comment": "no evidence"
|
||||
}
|
||||
]
|
||||
}
|
||||
13
packages/schemas/fixtures/openontology/valid/source.json
Normal file
13
packages/schemas/fixtures/openontology/valid/source.json
Normal file
|
|
@ -0,0 +1,13 @@
|
|||
{
|
||||
"openontology": "0.1",
|
||||
"kind": "Source",
|
||||
"id": "ex:source:repo",
|
||||
"sourceType": "git-commit",
|
||||
"uri": "https://example.org/repo/commit/abc123",
|
||||
"title": "Repository commit",
|
||||
"publisher": "example.org",
|
||||
"retrievedAt": "2026-07-26T00:00:00Z",
|
||||
"contentHash": "sha256:aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa",
|
||||
"mediaType": "text/plain",
|
||||
"license": "MIT"
|
||||
}
|
||||
Loading…
Add table
Add a link
Reference in a new issue